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Systems Microbial Ecology Laboratory : Publication

Publication

2025

Woo, S. Y., Park, S. B., Lee, S. Y., Sul, W. J., & Chun, H. S. (2025). Mycotoxin and microbiome profiling for aflatoxin control in the Korean traditional fermented soybean paste Doenjang. Journal of Hazardous Materials , 137777.

2024

Heo, S. H., Choi, B. Y., Kang, J., Jung, J. Y., Kim, H. C., Lee, S. J., ... & Lee, S. W. (2024). Dynamics of the airway microbiome in response to exposure to particulate matter 2.5 in patients with chronic obstructive pulmonary disease. Science of The Total Environment, 956, 177314.

Oh, H. N., Sul, W. J., Son, S. Y., Han, S. U., Hur, H., & Lim, S. G. (2024). Effect of Enterotype-Dependent Stability of the Gut Microbiome on Postgastrectomy Malnutrition in Gastric Cancer Patients. Gastroenterology, 167(7), 1449-1452.

Choi, M. H., Kim, D., Lee, K. H., Kim, H. J., Sul, W. J., & Jeong, S. H. (2024). Dysbiosis of the gut microbiota is associated with in-hospital mortality in patients with antibiotic-associated diarrhoea: A metagenomic analysis. International Journal of Antimicrobial Agents, 64(5), 107330.

Myeong, N. R., Choe, Y. H., Shin, S. C., Kim, J., Sul, W. J., & Kim, M. (2024). Genomic profiling of Antarctic geothermal microbiomes using long-read, Hi-C, and single-cell techniques. Scientific Data, 11(1), 1023.

Oh, H. N., Shin, S. Y., Kim, J. H., Baek, J., Kim, H. J., Lee, K. M., ... & Choi, C. H. (2024). Dynamic changes in the gut microbiota composition during adalimumab therapy in patients with ulcerative colitis: implications for treatment response prediction and therapeutic targets. Gut Pathogens, 16(1), 44.

Seong, H. J., Kim, J. J., Kim, T., Ahn, S. J., Rho, M., Lee, K. J., & Sul, W. J. (2024). Recovery of 240 metagenome-assembled genomes from coastal mariculture environments in South Korea. Scientific Data, 11(1), 902.

Min, H. J., Choi, B. Y., Sul, W. J., & Cho, H. J. (2024). Microbiome and Mycobiome Analyses of Continuous Positive Airway Pressure Devices. Clinical and Experimental Otorhinolaryngology, 17(4), 292-301.

Song, Y. J., Kim, J. J., Sul, W. J., & Park, K. (2024). Calcium carbonate particle platform for chemodynamic and self-luminescent photodynamic combination antibacterial therapy. Journal of Environmental Chemical Engineering, 12(2), 111987.

Sul, W. J. (2024). Host-Associated Microbiome. Journal of Microbiology, 62(3), 135-136.

Leem, S., Keum, H. L., Song, H. J., Gu, K. N., Kim, Y., Seo, J. Y., ... & Kang, N. G. (2024). Skin aging‐related microbial types separated by Cutibacterium and α‐diversity. Journal of Cosmetic Dermatology, 23(3), 1066-1074.

Lee, S., Ryu, S. H., Sul, W. J., Kim, S., Kim, D., & Seo, S. (2024). Association of exposure to indoor molds and dampness with allergic diseases at water-damaged dwellings in Korea. Scientific Reports, 14(1), 135.

2023

Seong, H. J., Kim, J. J., & Sul, W. J. (2023). ACR: metagenome-assembled prokaryotic and eukaryotic genome refinement tool. Briefings in bioinformatics24(6)

Kim, N. H., Choi, B. Y., Kim, E. S., Kim, S. J., Hong, J. Y., Heo, S. H., ... & Lee, S. W. (2023). Systemic antibiotics cause deterioration of emphysema associated with exaggerated inflammation and autophagy. , Experimental & Molecular Medicine 55(10), 2260-2268.

Kim, H. S., Keum, H. L., Chung, I. Y., Nattkemper, L., Head, C. R., Koh, A., ... & Yosipovitch, G. (2023). Characterization of a perturbed skin microbiome in prurigo nodularis and lichen simplex chronicus. , The Journal of investigative dermatology 143(10), 2082-2085.

Kim, J. J., Seong, H. J., Johnson, T. A., Cha, C. J., Sul, W. J., & Chae, J. C. (2023). Persistence of antibiotic resistance from animal agricultural effluents to surface water revealed by genome-centric metagenomics. Journal of Hazardous Materials 457, 131761.

Shin Shin, S., Oh, H. N., Moon, J. M., Joo, H. J., Sul, W. J., & Choi, C. H. (2023). P710 Changes of gut microbiome after anti-TNF-α therapy and the prediction of clinical remission in patients with active ulcerative colitis. Journal of Crohn's and Colitis 17(Supplement_1), i840-i841.

Kim, H., Woo, O. G., Kim, J. B., Yoon, S. Y., Kim, J. S., Sul, W. J., ... & Lee, J. H. (2023). Flavobacterium sp. strain GJW24 ameliorates drought resistance in Arabidopsis and Brassica. Frontiers in Plant Science 14, 1257137.

Lee, S. M., Keum, H. L., & Sul, W. J. (2023). Bacterial crosstalk via antimicrobial peptides on the human skin: therapeutics from a sustainable perspective. Journal of Microbiology 61(1), 1-11.

Yun, H. S., Sul, W. J., Chung, H. S., Lee, J. H., & Kwon, C. (2023). Secretory membrane traffic in plant–microbe interactions. New Phytologist 237(1), 53-59.

2022

Lee, J. S., Lee, S. M., Son, H. S., Yoon, Y. N., Shin, J. E., Sul, W. J., ... & Lee, Y. W. (2022). Analysis of the microbiome of the ear canal in normal individuals and patients with chronic otitis externa. Annals of Dermatology 34(6), 461.

Oh, H. N., Myeong, N. R., Kim, T., Min, G. S., Kim, S., & Sul, W. J. (2022). Changes in fecal pellet microbiome of the cold-adapted antarctic copepod Tigriopus kingsejongensis at different temperatures and developmental stages. Microbial ecology 1-13.

Seong, H. J., Roux, S., Hwang, C. Y., & Sul, W. J. (2022). Marine DNA methylation patterns are associated with microbial community composition and inform virus-host dynamics. Microbiome 10(1), 157.

Kim, S., Lee, H., Hur, S. D., Sul, W. J., & Kim, O. S. (2022). Glaciers as microbial habitats: current knowledge and implication. Journal of Microbiology 60(8), 767-779.

Han, H. S., Shin, S. H., Choi, B. Y., Koo, N., Lim, S., Son, D., ... & Sul, W. J. (2022). Erratum to: A split face study on the effect of an anti-acne product containing fermentation products of Enterococcus faecalis CBT SL-5 on skin microbiome modification and acne improvement. Journal of microbiology (Seoul, Korea) 60(7), 766.

Cho, Y. J., Kim, T., Croll, D., Park, M., Kim, D., Keum, H. L., ... & Jung, W. H. (2022). Genome of Malassezia arunalokei and its distribution on facial skin. Microbiology spectrum 10(3), e00506-22.

Kim, O. H., Choi, B. Y., Kim, D. K., Kim, N. H., Rho, J. K., Sul, W. J., & Lee, S. W. (2022). The microbiome of lung cancer tissue and its association with pathological and clinical parameters. American journal of cancer research 12(5), 2350.

Han, H. S., Shin, S. H., Choi, B. Y., Koo, N., Lim, S., Son, D., ... & Sul, W. J. (2022). A split face study on the effect of an anti-acne product containing fermentation products of Enterococcus faecalis CBT SL-5 on skin microbiome modification and acne improvement. Journal of Microbiology 60(5), 488-495.

Santhanarajan, A. E., Rhee, C., Sul, W. J., Yoo, K., Seong, H. J., Kim, H. G., & Koh, S. C. (2022). Transcriptomic analysis of degradative pathways for azo dye acid blue 113 in Sphingomonas melonis B-2 from the dye wastewater treatment process. Microorganisms 10(2), 438.

Kim, H. J., Oh, H. N., Park, T., Kim, H., Lee, H. G., An, S., & Sul, W. J. (2022). Aged related human skin microbiome and mycobiome in Korean women.Scientific reports12(1), 2351.

2021

Seong, H. J., Kim, J. J., Kim, T., Ahn, S. J., Rho, M., & Sul, W. J. (2021). A case study on the distribution of the environmental resistome in Korean shrimp farms.Ecotoxicology and Environmental Safety227, 112858.

Lee, G. E., Kim, J. J., Kim, H. S., & Sul, W. J. (2021). Metagenomic analysis of the dust particles collected from the suction tube and the suction funnel of a dermatological laser smoke evacuator system.Lasers in Medical Science36, 1249-1260.

Santhanarajan, A. E., Sul, W. J., Yoo, K. J., Seong, H. J., Kim, H. G., & Koh, S. C. (2021). Metagenomic insight of a full scale eco-friendly treatment system of textile dye wastewater using bioaugmentation of the composite culture CES-1.Microorganisms9(7), 1503.

Lee, G. Y., Seong, H. J., Sul, W. J., & Yang, S. J. (2021). Genomic information on linezolid-resistant sequence-type 398 livestock-associated methicillin-resistant Staphylococcus aureus isolated from a pig.Foodborne Pathogens and Disease18(6), 378-387.

Whon, T. W., Kim, H. S., Shin, N. R., Sung, H., Kim, M. S., Kim, J. Y., ... & Bae, J. W. (2021). Calf diarrhea caused by prolonged expansion of autochthonous gut Enterobacteriaceae and their lytic bacteriophages.Msystems6(2), 10-1128.

Lim, E. S., Kim, J. J., Sul, W. J., Kim, J. S., Kim, B., Kim, H., & Koo, O. K. (2021). Metagenomic analysis of microbial composition revealed cross-contamination pathway of bacteria at a foodservice facility.Frontiers in microbiology12, 636329.

Kim, J., Park, T., Kim, H. J., An, S., & Sul, W. J. (2021). Inferences in microbial structural signatures of acne microbiome and mycobiome.Journal of Microbiology59, 369-375.

Park, H. J., Seong, H. J., Lee, J., Heo, L., Sul, W. J., & Han, S. W. (2021). Two DNA methyltransferases for site-specific 6mA and 5mC DNA modification in Xanthomonas euvesicatoria.Frontiers in Plant Science12, 621466.

Seong, H. J., Han, S. W., & Sul, W. J. (2021). Prokaryotic DNA methylation and its functional roles.Journal of Microbiology59, 242-248.

2020

Lee, K., Kim, D. W., Lee, D. H., Kim, Y. S., Bu, J. H., Cha, J. H., ... & Cha, C. J. (2020). Mobile resistome of human gut and pathogen drives anthropogenic bloom of antibiotic resistance.Microbiome8, 1-14.

Hong, I., Lee, H. G., Keum, H. L., Kim, M. J., Jung, U. W., Kim, K., ... & Cha, J. K. (2020). Clinical and microbiological efficacy of pyrophosphate containing toothpaste: a double-blinded placebo-controlled randomized clinical trial. Microorganisms8(11), 1806.

Gunathilake, M., Lee, J., Choi, I. J., Kim, Y. I., Yoon, J., Sul, W. J., ... & Kim, J. (2020). Alterations in gastric microbial communities are associated with risk of gastric cancer in a Korean population: a case-control study.Cancers12(9), 2619.

Keum, H. L., Kim, H., Kim, H. J., Park, T., Kim, S., An, S., & Sul, W. J. (2020). Structures of the skin microbiome and mycobiome depending on skin sensitivity.Microorganisms8(7), 1032.

Kim, N., Kim, J. J., Kim, I., Mannaa, M., Park, J., Kim, J., ... & Seo, Y. S. (2020). Type VI secretion systems of plant‐pathogenic Burkholderia glumae BGR1 play a functionally distinct role in interspecies interactions and virulence.Molecular Plant Pathology21(8), 1055-1069.

Woo, O. G., Kim, H., Kim, J. S., Keum, H. L., Lee, K. C., Sul, W. J., & Lee, J. H. (2020). Bacillus subtilis strain GOT9 confers enhanced tolerance to drought and salt stresses in Arabidopsis thaliana and Brassica campestris.Plant Physiology and Biochemistry148, 359-367.

Kim, J. E., Woo, O. G., Bae, Y., Keum, H. L., Chung, S., Sul, W. J., & Lee, J. H. (2020). Enhanced drought and salt stress tolerance in Arabidopsis by Flavobacterium crocinum HYN0056 T.Journal of Plant Biology63, 63-71.

2019

Oh, T. J., Sul, W. J., Oh, H. N., Lee, Y. K., Lim, H. L., Choi, S. H., ... & Jang, H. C. (2019). Butyrate attenuated fat gain through gut microbiota modulation in db/db mice following dapagliflozin treatment.Scientific Reports9(1), 20300.

Kim, H. J., Kim, J. J., Myeong, N. R., Kim, T., Kim, D., An, S., ... & Sul, W. J. (2019). Segregation of age-related skin microbiome characteristics by functionality.Scientific Reports9(1), 16748.

Oh, H. N., Park, D., Seong, H. J., Kim, D., & Sul, W. J. (2019). Antarctic tundra soil metagenome as useful natural resources of cold-active lignocelluolytic enzymes.Journal of Microbiology57, 865-873.

Emmanuel, S. A., Sul, W. J., Seong, H. J., Rhee, C., Ekpheghere, K. I., Kim, I. S., ... & Koh, S. C. (2019). Metagenomic analysis of relationships between the denitrification process and carbon metabolism in a bioaugmented full-scale tannery wastewater treatment plant.World Journal of Microbiology and Biotechnology35, 1-12.

Lee, T. K., Han, I., Kim, M. S., Seong, H. J., Kim, J. S., & Sul, W. J. (2019). Characterization of a nifH-harboring bacterial community in the soil-limited Gotjawal forest.Frontiers in Microbiology10, 1858.

Han, G. P., Lee, K. C., Kang, H. K., Oh, H. N., Sul, W. J., & Kil, D. Y. (2019). Analysis of excreta bacterial community after forced molting in aged laying hens.Asian-Australasian journal of animal sciences32(11), 1715.

Lee, J., Cho, J., Cho, Y. J., Cho, A., Woo, J., Lee, J., ... & Kim, O. S. (2019). The latitudinal gradient in rock-inhabiting bacterial community compositions in Victoria Land, Antarctica.Science of The Total Environment657, 731-738.

2018

Park, J. H., Park, J. H., Seong, H. J., Sul, W. J., Jin, K. H., & Park, H. D. (2018). Metagenomic insight into methanogenic reactors promoting direct interspecies electron transfer via granular activated carbon.Bioresource technology259, 414-422.

Kim, D., Park, H. J., Sul, W. J., & Park, H. (2018). Transcriptome analysis of Pseudomonas sp. from subarctic tundra soil: pathway description and gene discovery for humic acids degradation.Folia microbiologica63, 315-323.

2017

Lee, K. C., Kil, D. Y., & Sul, W. J. (2017). Cecal microbiome divergence of broiler chickens by sex and body weight.Journal of Microbiology55, 939-945.
- Park, T., Kim, H. J., Myeong, N. R., Lee, H. G., Kwack, I., Lee, J., ... & An, S. (2017). Collapse of human scalp microbiome network in dandruff and seborrhoeic dermatitis.Experimental dermatology26(9), 835-838.
  - Stedtfeld, R. D., Stedtfeld, T. M., Waseem, H., Fitschen-Brown, M., Guo, X., Chai, B., ... & Hashsham, S. A. (2017). Isothermal assay targeting class 1 integrase gene for environmental surveillance of antibiotic resistance markers.Journal of environmental management198, 213-220.
    - Lee, J., Han, I., Kang, B. R., Kim, S. H., Sul, W. J., & Lee, T. K. (2017). Degradation of crude oil in a contaminated tidal flat area and the resilience of bacterial community.Marine pollution bulletin114(1), 296-301.
      - Park, H. J., Seong, H. J., Sul, W. J., Oh, C. S., & Han, S. W. (2017). Complete genome sequence of Acidovorax citrulli strain KACC17005, a causal agent for bacterial fruit blotch on watermelon.Korean Journal of Microbiology53(4), 340-341.
        
        Jang, Y., Yoo, Y. J., Sul, W. J., Cha, C. J., Rhee, O. J., & Chae, J. C. (2017). Effect of antibiotic resistant factors in effluent of wastewater treatment plant on stream.Korean Journal of Microbiology53(4), 316-319.
        
        2016
        
        Wang, F., Stedtfeld, R. D., Kim, O. S., Chai, B., Yang, L., Stedtfeld, T. M., ... & Sul, W. J. (2016). Influence of soil characteristics and proximity to Antarctic research stations on abundance of antibiotic resistance genes in soils.Environmental science & technology50(23), 12621-12629.
        
        Seong, H. J., Park, H. J., Hong, E., Lee, S. C., Sul, W. J., & Han, S. W. (2016). Methylome analysis of two Xanthomonas spp. using single-molecule real-time sequencing.The plant pathology journal32(6), 500.
        
        Sul, W. J., Kim, I. S., Ekpeghere, K. I., Song, B., Kim, B. S., Kim, H. G., ... & Koh, S. C. (2016). Metagenomic insight of nitrogen metabolism in a tannery wastewater treatment plant bioaugmented with the microbial consortium BM-S-1.Journal of Environmental Science and HealthPart A, 51(13), 1164-1172.
        
        Myeong, N. R., Seong, H. J., Kim, H. J., & Sul, W. J. (2016). Complete genome sequence of antibiotic and anticancer agent violacein producing Massilia sp. strain NR 4-1.Journal of Biotechnology223, 36-37.
        
        2015
        
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