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Systems Microbial Ecology Laboratory : Publication



Aged related human skin microbiome and mycobiome in Korean women. 2022 Scientific Reports <<Link>>


Metagenomic analysis of the dust particles collected from the suction tube and the suction funnel of a dermatological laser smoke evacuator system. 2021 Lasers in Medical Science <<Link>>

Inferences in microbial structural signatures of acne microbiome and mycobiome. 2021 Journal of Microbiology <<Link>>

Prokaryotic DNA methylation and its functional roles. 2021 Journal of Microbiology <<Link>>

Calf diarrhea caused by prolonged expansion of autochthonous gut Enterobacteriaceae and their lytic bacteriophages. 2021 mSystems <<Link>>

Two DNA methyltransferases for site-Specific 6mA and 5mC DNA modification in Xanthomonas euvesicatoria. 2021 Frontiers in Plant Science <<Link>>

Genomic Information on Linezolid-Resistant Sequence-Type 398 Livestock-Associated Methicillin-Resistant Staphylococcus aureus Isolated from a Pig. 2021 Foodborne Pathogens and Disease <<Link>>

Metagenomic analysis of microbial composition revealed cross-contamination pathway of bacteria at a foodservice facility. 2021 Frontiers in Microbiology <<Link>>

Metagenomic insight of a full scale eco-friendly treatment system of textile dye wastewater using bioaugmentation of the composite culture CES-1. 2021 Microorganisms <<Link>>

A case study on the distribution of the environmental resistome in Korean shrimp farms. 2021 Ecotoxicology and Environmental Safety <<Link>>

Changes in Fecal Pellet Microbiome of the Cold-Adapted Antarctic Copepod Tigriopus kingsejongensis at Different Temperatures and Developmental Stages. 2021 Microbial Ecology <<Link>>


Bacillus subtilis strain GOT9 confers enhanced tolerance to drought and salt stresses in Arabidopsis thaliana and Brassica campestris. 2020 Plant Physiology and Biochemistry

Enhanced Drought and Salt Stress Tolerance in Arabidopsis by Flavobacterium crocinum HYN0056T. 2020 Journal of Plant Biology

Type VI secretion systems of plant‐pathogenic Burkholderia glumae BGR1 play a functionally distinct role in interspecies interactions and virulence. 2020 Molecular Plant Pathology

Structures of the skin microbiome and mycobiome depending on skin sensitivity. 2020 Microorganisms

Alterations in gastric microbial communities are associated with risk of gastric cancer in a Korean population: A case-control study. 2020 Cancers

Mobile resistome of human gut and pathogen drives anthropogenic bloom of antibiotic resistance. 2020 Microbiome

Clinical and Microbiological Efficacy of Pyrophosphate Containing Toothpaste: A Double-Blinded Placebo-Controlled Randomized Clinical Trial. 2020 Microorganisms


The latitudinal gradient in rock-inhabiting bacterial community compositions in Victoria Land, Antarctica. 2019 Science of The Total Environment

Analysis of excreta bacterial community after forced molting in aged laying hens. 2019 Asian-Australasian Journal of Animal Sciences

Characterization of a nifH-harboring bacterial community in the soil-limited gotjawal forest. 2019 Frontiers in Microbiology

Metagenomic analysis of relationships between the denitrification process and carbon metabolism in a bioaugmented full-scale tannery wastewater treatment plant. 2019 World Journal of Microbiology and Biotechnology

Antarctic tundra soil metagenome as useful natural resources of cold-active lignocelluolytic enzymes. 2019 Journal of Microbiology

Segregation of age-related skin microbiome characteristics by functionality. 2019 Scientific Reports

Butyrate attenuated fat gain through gut microbiota modulation in db/db mice following dapagliflozin treatment. 2019 Scientific Reports


Transcriptome analysis of Pseudomonas sp. from subarctic tundra soil: pathway description and gene discovery for humic acids degradation. 2018 Folia microbiologica

Fragile skin microbiomes in megacities are assembled by a predominantly niche-based process. 2018 Science Advances

Metagenomic insight into methanogenic reactors promoting direct interspecies electron transfer via granular activated carbon. 2018 Bioresource Technology


Degradation of crude oil in a contaminated tidal flat area and the resilience of bacterial community. 2017 Marine Pollution Bulletin

Collapse of human scalp microbiome network in dandruff and seborrhoeic dermatitis. 2017 Experimental Dermatology

Isothermal assay targeting class 1 integrase gene for environmental surveillance of antibiotic resistance markers. 2017 Journal of Environmental Management

Metagenomic SMRT sequencing-based exploration of novel lignocellulose-degrading capability in wood detritus from Torreya nucifera in Bija Forest on Jeju Island. 2017 Journal of Microbiology and Biotechnology

Cecal microbiome divergence of broiler chickens by sex and body weight. 2017 Journal of Microbiology

Effect of antibiotic resistant factors in effluent of wastewater treatment plant on stream. 2017 Korean Journal of Microbiology

Complete genome sequence of Acidovorax citrulli strain KACC17005, a causal agent for bacterial fruit blotch on watermelon. 2017 Korean Journal of Microbiology


Complete genome sequence of antibiotic and anticancer agent violacein producing Massilia sp. strain NR 4-1. 2016 Journal of Biotechnology

Metagenomic insight of nitrogen metabolism in a tannery wastewater treatment plant bioaugmented with the microbial consortium BM-S-1. 2016 Journal of Environmental Science and Health, Part A

Influence of soil characteristics and proximity to Antarctic research stations on abundance of antibiotic resistance genes in soils 2016 Environmental Science & Technology

Methylome analysis of two Xanthomonas spp. using single-molecule real-time sequencing. 2016 The Plant Pathology Journal

Complete genome sequence of a cold-adapted humic acid degrading bacterium Pedobacter sp. PAMC 27299 from the Antarctic seashore 2016 Korean Journal of Microbiology


Temporal changes in soil bacterial diversity and humic substances degradation in subarctic tundra soil 2015 Microbial Ecology

Functional identification of OphR, an IclR family transcriptional regulator involved in the regulation of the phthalate catabolic operon in Rhodococcus sp. strain DK17 2015 Indian journal of microbiology

Metagenomic analysis of chicken gut microbiota for improving metabolism and health of chickens—a review. 2015 Asian-Australasian Journal of Animal Sciences


Marine bacteria exhibit a bipolar distribution 2013 Proceedings of the National Academy of Sciences

Tropical agricultural land management influences on soil microbial communities through its effect on soil organic carbon 2013 Soil Biology and Biochemistry

Oligotyping: differentiating between closely related microbial taxa using 16S rRNA gene data 2013 Methods in ecology and evolution

Recently deglaciated high-altitude soils of the Himalaya: diverse environments, heterogenous bacterial communities and long-range dust inputs from the upper troposphere 2013 PLoS One

In-feed antibiotic effects on the swine intestinal microbiome 2012 Proceedings of the National Academy of Sciences

Bacterial community comparisons by taxonomy-supervised analysis independent of sequence alignment and clustering 2011 Proceedings of the National Academy of Sciences

Novel biphenyl-oxidizing bacteria and dioxygenase genes from a Korean tidal mudflat 2011 Applied and environmental microbiology

Bacterial diversity in rhizosphere soil from Antarctic vascular plants of Admiralty Bay, maritime Antarctica 2010 The ISME journal

Gene-targeted-metagenomics reveals extensive diversity of aromatic dioxygenase genes in the environment 2010 The ISME journal

Forms and Functions of Meso and Micro-niches of Carbon within Soil Aggregates 2010 Journal of nematology

Assessment of bias associated with incomplete extraction of microbial DNA from soil 2009 Applied and environmental microbiology

DNA-stable isotope probing integrated with metagenomics for retrieval of biphenyl dioxygenase genes from polychlorinated biphenyl-contaminated river sediment 2009 Applied and Environmental Microbiology

Glucose additions to aggregates subjected to drying/wetting cycles promote carbon sequestration and aggregate stability 2007 Soil Biology and Biochemistry

Burkholderia xenovorans LB400 harbors a multi-replicon, 9.73-Mbp genome shaped for versatility 2006 Proceedings of the National Academy of Sciences

Molecular and biochemical analysis of phthalate and terephthalate degradation by Rhodococcus sp. strain DK17 2005 FEMS microbiology letters

Implication of two glutathione S-transferases in the optimal metabolism of m-toluate by Sphingomonas yanoikuyae B1 2003 Antonie Van Leeuwenhoek