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Systems Microbial Ecology Laboratory : Publication

Publication

 

Park J-H, Park J-H, Seong HJ, Sul WJ, Jin K-H, Park H-D. 2018. Metagenomic insight into methanogenic reactors promoting direct interspecies electron transfer via granular activated carbon. Bioresource Technology 259:414-422. doi: 10.1016/j.biortech.2018.03.050

 

Kim H-J, Kim H, Kim JJ, Myeong NR, Kim T, Park T, Kim E, Choi J-y, Lee J, An S, Sul WJ. 2018. Fragile skin microbiomes in megacities are assembled by a predominantly niche-based process. Science Advances 4. doi: 10.1126/sciadv.1701581

 

Stedtfeld RD, Stedtfeld TM, Waseem H, Fitschen-Brown M, Guo XP, Chai BL, Williams MR, Shook T, Logan A, Graham A, et al. 2017. Isothermal assay targeting class 1 integrase gene for environmental surveillance of antibiotic resistance markers. Journal of Environmental Management 198:213-220. doi: 10.1016/j.jenvman.2017.04.079.

 

Park T, Kim HJ, Myeong NR, Lee HG, Kwack I, Lee J, Kim BJ, Sul WJ, An S. 2017. Collapse of human scalp microbiome network in dandruff and seborrhoeic dermatitis. Experimental Dermatology 26:835-838. doi: 10.1111/exd.13293.

 

Park HJ, Seong HJ, Sul WJ, Oh CS, Han SW. 2017. Complete genome sequence of Acidovorax citrulli strain KACC17005, a causal agent for bacterial fruit blotch on watermelon. Korean Journal of Microbiology 53(4):340-341. doi: 10.7845/kjm.2017.7084.

 

Oh HN, Lee TK, Park JW, No JH, Kim D, Sul WJ. 2017. Metagenomic SMRT Sequencing-Based Exploration of Novel Lignocellulose-Degrading Capability in Wood Detritus from Torreya nucifera in Bija Forest on Jeju Island. Journal of Microbiology and Biotechnology 27:1670-1680. doi: 10.4014/jmb.1705.05008.

 

Lee KC, Kil DY, Sul WJ. 2017. Cecal microbiome divergence of broiler chickens by sex and body weight. Journal of Microbiology 55:939-945. doi: 10.1007/s12275-017-7202-0.

 

Lee J, Han I, Kang BR, Kim SH, Sul WJ, Lee TK. 2017. Degradation of crude oil in a contaminated tidal flat area and the resilience of doi: 10.1016/j.marpolbul.2016.09.043.bacterial community. Marine Pollution Bulletin 114:296-301. 

 

Kim D, Park HJ, Sul WJ, Park H. (Kim2017 co-authors). 2017. Transcriptome analysis of Pseudomonas sp. from subarctic tundra soil: pathway description and gene discovery for humic acids degradation. Folia Microbiologica. doi: 10.1007/s12223-017-0573-0.

 

Wang F, Stedtfeld RD, Kim OS, Chai B, Yang L, Stedtfeld TM, Hong SG, Kim D, Lim HS, Hashsham SA, et al. 2016. Influence of Soil Characteristics and Proximity to Antarctic Research Stations on Abundance of Antibiotic Resistance Genes in Soils. Environmental Science & Technology 50:12621-12629. doi: 10.1021/acs.est.6b02863.

 

Sul WJ, Kim IS, Ekpeghere KI, Song B, Kim BS, Kim HG, Kim JT, Koh SC. 2016. Metagenomic insight of nitrogen metabolism in a tannery wastewater treatment plant bioaugmented with the microbial consortium BM-S-1. Journal of Environmental Science and Health Part a-Toxic/Hazardous Substances & Environmental Engineering 51:1164-1172. doi: 10.1080/10934529.2016.1206387.

 

Seong HJ, Park HJ, Hong E, Lee SC, Sul WJ, Han SW. 2016. Methylome Analysis of Two Xanthomonas spp. Using Single-Molecule Real-Time Sequencing. Plant Pathology Journal 32:500. doi: 10.5423/PPJ.FT.10.2016.0216.

 

Myeong NR, Seong HJ, Kim HJ, Sul WJ. 2016. Complete genome sequence of antibiotic and anticancer agent violacein producing Massilia sp strain NR 4-1. Journal of Biotechnology 223:36-37. doi: 10.1016/j.jbiotec.2016.02.027.

 

Park HJ, Chae N, Sul WJ, Lee BY, Lee YK, Kim D. 2015. Temporal Changes in Soil Bacterial Diversity and Humic Substances Degradation in Subarctic Tundra Soil. Microbial Ecology 69:668-675. doi: 10.1007/s00248-014-0499-x.

 

Choi KY, Lee TK, Sul WJ. 2015. Metagenomic Analysis of Chicken Gut Microbiota for Improving Metabolism and Health of Chickens - A Review. Asian-Australasian Journal of Animal Sciences 28:1217-1225. doi: 10.5713/ajas.15.0026.

 

Choi KY, Kang BS, Nam MH, Sul WJ, Kim E. 2015. Functional Identification of OphR, an IclR Family Transcriptional Regulator Involved in the Regulation of the Phthalate Catabolic Operon in Rhodococcus sp Strain DK17. Indian Journal of Microbiology 55:313-318. doi: 10.1007/s12088-015-0529-5.

 

Sul WJ, Oliver TA, Ducklow HW, Amaral-Zettler LA, Sogin ML. 2013. Marine bacteria exhibit a bipolar distribution. Proceedings of the National Academy of Sciences of the United States of America 110:2342-2347. doi: 10.1073/pnas.1212424110.

 

Stres B, Sul WJ, Murovec B, Tiedje JM. 2013. Recently Deglaciated High-Altitude Soils of the Himalaya: Diverse Environments, Heterogenous Bacterial Communities and Long-Range Dust Inputs from the Upper Troposphere. Plos One 8. doi: 10.1371/journal.pone.0076440.

 

Eren AM, Maignien L, Sul WJ, Murphy LG, Grim SL, Morrison HG, Sogin ML. 2013. Oligotyping: differentiating between closely related microbial taxa using 16S rRNA gene data. Methods in Ecology and Evolution 4:1111-1119. doi: 10.1111/2041-210X.12114.

 

Looft T, Johnson TA, Allen HK, Bayles DO, Alt DP, Stedtfeld RD, Sul WJ, Stedtfeld TM, Chai BL, Cole JR, et al. 2012. In-feed antibiotic effects on the swine intestinal microbiome. Proceedings of the National Academy of Sciences of the United States of America 109:1691-1696. doi: 10.1073/pnas.1120238109.

 

Sul WJ, Cole JR, Jesus ED, Wang Q, Farris RJ, Fish JA, Tiedje JM. 2011. Bacterial community comparisons by taxonomy-supervised analysis independent of sequence alignment and clustering. Proceedings of the National Academy of Sciences of the United States of America 108:14637-14642. doi: 10.1073/pnas.1111435108.

 

Lee TK, Lee J, Sul WJ, Iwai S, Chai BC, Tiedje JM, Park J. 2011. Novel Biphenyl-Oxidizing Bacteria and Dioxygenase Genes from a Korean Tidal Mudflat. Applied and Environmental Microbiology 77:3888-3891. doi: 10.1128/AEM.00023-11.

 

Teixeira L, Peixoto RS, Cury JC, Sul WJ, Pellizari VH, Tiedje J, Rosado AS. 2010. Bacterial diversity in rhizosphere soil from Antarctic vascular plants of Admiralty Bay, maritime Antarctica. Isme Journal 4:989-1001. doi: 10.1038/ismej.2010.35.

 

Iwai S, Chai BL, Sul WJ, Cole JR, Hashsham SA, Tiedje JM. 2010. Gene-targeted-metagenomics reveals extensive diversity of aromatic dioxygenase genes in the environment. Isme Journal 4:279-285. doi: 10.1038/ismej.2009.104.

 

Sul WJ, Park J, Quensen JF, Rodrigues JLM, Seliger L, Tsoi TV, Zylstra GJ, Tiedje JM. 2009. DNA-Stable Isotope Probing Integrated with Metagenomics for Retrieval of Biphenyl Dioxygenase Genes from Polychlorinated Biphenyl-Contaminated River Sediment. Applied and Environmental Microbiology 75:5501-5506. doi: 10.1128/AEM.00121-09.

 

Feinstein LM, Sul WJ, Blackwood CB. 2009. Assessment of Bias Associated with Incomplete Extraction of Microbial DNA from Soil. Applied and Environmental Microbiology 75:5428-5433. doi: 10.1128/AEM.00120-09.

 

Chain PSG, Denef VJ, Konstantinidis KT, Vergez LM, Agullo L, Reyes VL, Hauser L, Cordova M, Gomez L, Gonzalez M, et al. 2006. Burkholderia xenovorans LB400 harbors a multi-replicon, 9.73-Mbp genome shaped for versatility. Proceedings of the National Academy of Sciences of the United States of America 103:15280-15287. doi: 10.1073/pnas.0606924103.

 

Choi KY, Kim D, Sul WJ, Chae JC, Zylstra GJ, Kim YM, Kim E. 2005. Molecular and biochemical analysis of phthalate and terephthalate degradation by Rhodococcus sp strain DK17. Fems Microbiology Letters 252:207-213. doi: 10.1016/j.femsle.2005.08.045.

 

Bae M, Sul WJ, Koh SC, Lee JH, Zylstra GJ, Kim YM, Kim EB. 2003. Implication of two glutathione S-transferases in the optimal metabolism of m-toluate by Sphingomonas yanoikuyae B1. Antonie Van Leeuwenhoek International Journal of General and Molecular Microbiology 84:25-30. doi: 10.1023/A:1024428715390.

 
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