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Systems Microbial Ecology Laboratory : Publication

Publication

<<2021>>

 

 

<<2020>>

 Keum Hye Lim, Kim Hanbyul, Kim Hye-Jin, Taehun Park, Seoyung Kim, Susun An, Sul WJ. 2020. Structures of the Skin Microbiome and Mycobiome Depending on Skin Sensitivity. Microorganisms. 8:1032.

 

 

Kim, N, Kim Jin Ju, Kim I, Mannaa, M, Park J, Kim J, Lee HH, Lee SB; Park DS Sul, WJ, Seo YS. 2020. Type VI secretion systems of plantpathogenic Burkholderia glumae BGR1 play a functionally distinct role in interspecies interactions and virulence. Molecular Plant Pathology 21 (8), 1055-1069

Co-corresponding authors.*, 148: 359-367. Plant Physiology and Biochemistry. Brassica campestris and Arabidopsis thaliana strain GOT9 confers enhanced tolerance to drought and salt stresses in Bacillus subtilisWoo OG, Kim H, Kim JS, Keum HL, Lee KC, Sul WJ*, Lee JH*. 2020.

 

Lee K, Kim DW, Lee DH, Kim YS, Bu JH, Cha JH, Thawng CN, Hwang EM, Seong HJ, Sul WJ, Wellington EMH, Quince C, Cha CJ. 2020. Mobile resistome of human gut and pathogen drives anthropogenic bloom of antibiotic resistance. Microbiome,8: 2.

Kim J, Woo OG, Bae Y, Keum HL, Chung S, Sul WJ*, Lee JH*. 2020. Enhanced Drought and Salt Stress Tolerance in Arabidopsis by Flavobacterium crocinum HYN0056.  Journal of Plant Biology, 63:63-71. *Co-corresponding authors.

<<2019>>

Oh TJ*, Sul WJ*, Oh HN, Lee YK, Lim HL, Choi SH, Park KS, Jang HC. 2019. Butyrate attenuated fat gain through gut microbiota modulation in db/db mice following dapagliflozin treatment. Scientific Reports, 9:20300. *Co-corresponding authors.

Kim HJ, Kim JJ, Myeong NR, Kim T, Kim D, An S, Kim H, Park T, Jang SI, Yeon JH, Kwack I, Sul WJ. 2019. Segregation of age-related skin microbiome characteristics by functionality. Scientific Reports, 9: 16748.

Oh HN, Park D, Seong HJ, Kim D, Sul WJ. 2019. Antarctic tundra soil metagenome as useful natural resources of cold-active lignocelluolytic enzymes. Journal of Microbiology, 57: 865-873.

Emmanuel SA*, Sul WJ*, Seong HJ, Rhee C, Ekpheghere KI, Kim IS, Kim HG, Koh SC. 2019. Metagenomic analysis of relationships between the denitrification process and carbon metabolism in a bioaugmented full-scale tannery wastewater treatment plant. World Journal of Microbiology and Biotechnology, 35: 149. *Equally contributed.

Lee J, Cho J, Cho YJ, Cho A, Woo J, Lee J, Hong SG, Sul WJ, Kim OS. 2019. The latitudinal gradient in rock-inhabiting bacterial community compositions in Victoria Land, Antarctica. Science of The Total Environment, 657: 731-738.

Han GP, Lee KC, Kang HK, Oh HN, Sul WJ, Kil DY.  2019. Analysis of excreta bacterial community after forced molting in aged laying hens. Asian-Australasian Journal of Animal Sciences, 32:1715-24.

Lee TK, Han I, Kim MS, Seong HJ, Kim JS, Sul WJ. 2019. Characterization of a Harboring Bacterial Community in the Soil-Limited Gotjawal Forest. Frontiers in Microbiology, 10:1858.

<<2018>>

Kim HJ, Kim H, Kim JJ, Myeong NR, Kim T, Park T, Kim E, Choi JY, Lee J, An S, Sul WJ. 2018. Fragile skin microbiomes in megacities are assembled by a predominantly niche-based process. Science Advances, 4:e1701581.

Park J-H, Park J-H, Seong HJ, Sul WJ, Jin K-H, Park H-D. 2018. Metagenomic insight into methanogenic reactors promoting direct interspecies electron transfer via granular activated carbon. Bioresource Technology, 259:414-422.

Kim D, Park HJ, WJ Sul, Park H. 2018. Transcriptome analysis of Pseudomonas sp. from subarctic tundra soil: pathway description and gene discovery for humic acids degradation. Folia Microbiologica, doi: 10.1007/s12223-017-0573-0.

<<before 2017>>

Lee, KC, DY Kil, WJ Sul. 2017. Cecal microbiome divergence of broiler chickens by sex and body weight. Journal of Microbiology, 55: 939-945.

Stedtfeld RD, Stedtfeld TM, Waseem H, Fitschen-Brown M, Guo X, Chai B, Williams MR, Shook T, Logan A, Graham A, Chae JC, Sul WJ, VanHouten J, Cole JR, Zylstra GJ, Tiedje JM, Upham BL, Hashsham SA. 2017. Isothermal assay targeting class 1 integrase gene for environmental surveillance of antibiotic resistance markers. Journal of Environmental Management, 198: 213-220.

Oh HN, TK Lee, JW Park, JH No, D Kim, WJ Sul. 2017. Metagenomic SMRT sequencing-based exploration of novel lignocellulose-degrading capability in wood detritus from Torreya nucifera in Bija forest on Jeju Island. Journal of Microbiology and Biotechnology, 27:1670-1680.

Park T, Kim H, Myeong NR, Lee HG, Kwack I, Lee J, Kim BJ, Sul WJ*, An S*. 2017. Collapse of human scalp microbiome network in dandruff and seborrheic dermatitis. Experimental Dermatology, 26: 835–838.  *Co-corresponding authors.

Lee J, Han I, Kang BR, Kim SH, Sul WJ, Lee TK. 2017. Degradation of crude oil in a contaminated tidal flat area and the resilience of bacterial community. Marine Pollution Bulletin, 114: 296-301.

Wang F, Stedtfeld RD, Kim OS, Chai B, Yang L, Stedtfeld TM, Hong SG, Kim D, Lim HS, Hashsham SA, Tiedje JM, Sul WJ. 2016. Influence of Soil Characteristics and Proximity to Antarctic Research Stations on Abundance of Antibiotic Resistance Genes in Soils. Environmental Science & Technology, 50:12621-12629.

Seong HJ, Park H, Hong E, Lee SC*, Sul WJ*, Han S*. 2016. Methylome Analysis of two Xanthomonas spp. using Single-Molecule Real-Time Sequencing. Plant Pathology Journal, 32:500. *Co-corresponding authors

Kim H, Park JW, Park HJ, Kim D, Sul WJ. 2016. Complete genome sequence of a cold-adapted humic acid degrading bacterium Pedobacter sp. PAMC 27299 from the Antarctic seashore. Korean Journal of Microbiology, 52:388-390.

Sul WJ, Kim IS, Ekpeghere KI, Song B, Kim BS, Kim HG, Kim JT, Koh SC. 2016. Metagenomic insight of nitrogen metabolism in a tannery wastewater treatment plant bioaugmented with the microbial consortium BM-S-1, Journal of Environmental Science and Health, Part A:Toxic/Hazardous Substances and Environmental Engineering. 51:1164-72.

Myeong NR, Seong HJ, Kim HJ, Sul WJ. 2016. Complete genome sequence of antibiotic and anticancer agent violacein producing Massilia sp. strain NR 4-1. Journal of Biotechnology, 10:223:36-7.

Choi KY, Lee TK, Sul WJ. 2015. Metagenomic Analysis of Chicken Gut Microbiota for Improving Metabolism and Health of Chickens - A Review. Asian-Australasian Journal of Animal Sciences, 28:1217-1225.

Choi KY, Kang BS, Nam MH, Sul WJ, Kim E. 2015. Functional Identification of OphR, an IclR Family Transcriptional Regulator Involved in the Regulation of the Phthalate Catabolic Operon in Rhodococcus sp. Strain DK17.  Indian Journal of Microbiology, 55:313-318.

Park HJ, Chae N, Sul WJ, Lee BY, Lee YK, Kim D. 2015. Temporal Changes in Soil Bacterial Diversity and Humic Substances Degradation in Subarctic Tundra Soil. Microbial Ecology, 69:668-675.

Eren MA, Maignien L, Sul WJ, Murphy GL, Morrison GH, Sogin ML. 2013. Oligotyping: High-resolution characterization of closely related bacterial taxa in high-throughput 16S rRNA gene data. Methods in Ecology and Evolution, 4:1111-1119.

Sul WJ, Asuming-Brempong S, Wang Q, Tourlousse DM, Penton CR, Deng Y, Rodrigues JLM, Adiku SGK, Jones JW, Zhou J, Cole JR, Tiedje JM. 2013. Tropical agricultural land management influences on soil microbial communities through its effect on soil organic carbon. Soil Biology and Biochemistry, 65:33-38.

Stres B, Sul WJ, Avguštin G, Tiedje JM. 2013. Recently deglaciated high-altitude soils of the himalaya: diverse environments, heterogenous bacterial communities and long-range dust inputs from the upper troposphere. PLoS One, 8:e76440.

Sul WJ, Oilver TA, Ducklow HW, Amaral-Zettler L, Sogin ML. 2013. Marine bacteria exhibit a bipolar distribution. Proceedings of the National Academy of Sciences USA, 110:2342–2347.

Looft T, Johnson TA, Allen HK, Bayles DO, Alt DP, Stedtfeld RD, Sul WJ, Stedtfeld TM, Chai B, Cole JR, Hashsham SA, Tiedje JM, Stanton TB. 2012. In-feed antibiotic effects on the swine intestinal microbiome. Proceedings of the National Academy of Sciences USA, 109:1691–1696.

Sul WJ, Cole JR, Jesus EC, Wang Q, Farris R, Fish JA, Tiedje JM. 2011. Bacterial community comparisons by taxonomy-supervised analysis independent of sequence alignment and clustering. Proceedings of the National Academy of Sciences USA, 108:14637–14624.

Lee TK, Lee J, Sul WJ, Iwai S, Chai B, Tiedje JM, Park J. 2011. Novel biphenyl-oxidizing bacteria and dioxygenase genes from a Korean tidal mudflat. Applied and Environmental Microbiology, 77:3888–3891.

Teixeira L, Peixoto R, Cury J, Sul WJ, Pellizari V, Tiedje JM, Rosado A. 2010. Bacterial diversity in rhizosphere soil from Antarctic vascular plants of Admiralty bay, maritime Antarctica. The ISME Journal, 4:989–1001.

Iwai S, Chai B, Sul WJ, Cole JR, Hashsham SA, Tiedje JM. 2010. Gene-targeted-metagenomics reveals extensive diversity of aromatic dioxygenase genes in the environment. The ISME Journal, 4:279–285.

Sul WJ, Park J, Quensen JF, Rodrigues JLM, Seliger L, Tsoi V, Zylstra, GJ, Tiedje JM. 2009. DNA-stable isotope probing integrated with metagenomics for retrieval of biphenyl dioxygenase genes from polychlorinated biphenyl-contaminated river sediment. Applied and Environmental Microbiology, 75:5501–5506.

Feinstein LM, Sul WJ, Blackwood CB. 2009. Assessment of bias associated with incomplete extraction of microbial DNA from soil. Applied and Environmental Microbiology, 75:5428–5433.

Park E, Sul WJ, Smucker AJM. 2007. Glucose additions to aggregates subjected to drying/wetting cycles promote carbon sequestration and aggregate stability. Soil Biology and Biochemistry, 39:2758–2768.

Chain PS, Denef VJ, Konstantinidis KT, Vergez LM, Agulló L, Reyes VL, Hauser L, Córdova M, Gómez L, González M, Land M, Lao V, Larimer F, LiPuma JJ, Mahenthiralingam E, Malfatti SA, Marx CJ, Parnell JJ, Ramette A, Richardson P, Seeger M, Smith D, Spilker T, Sul WJ, Tsoi TV, Ulrich LE, Zhulin IB, Tiedje JM. 2006. Burkholderia xenovorans LB400 harbors a multi-replicon, 9.73-Mbp genome shaped for versatility. Proceedings of the National Academy of Sciences USA, 103:15280–15287.

Choi KY, Kim D, Sul WJ, Chae JC, Zylstra GJ, Kim YM, Kim E. 2005. Molecular and biochemical analysis of phthalate and terephthalate degradation by Rhodococcus sp. strain DK17. FEMS Microbiol Letters, 252:207–213.

Bae M, Sul WJ, Koh SC, Lee JH, Zylstra GJ, Kim YM, Kim E. 2003. Implication of two glutathione S-transferases in the optimal metabolism of m-toluate by Sphingomonas yanoikuyae B1. Antonie Van Leeuwenhoek, 84:25–30. 

 

 

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